Adaptive Immunity in Tissues

How do tissues shape immune-cell fate and function?

Adaptive immune cells continually adjust to the tissues in which immune responses occur. We study how lymphocytes acquire, integrate, and interpret tissue-derived information to determine what they become and what they do.

Learn about our research
Two-photon microscopy of an immunized mouse lymph node showing green germinal-center B cells, red lineage-traced naïve B cells, and blue collagen-rich tissue structure
An immunized mouse lymph node imaged by two-photon microscopy. Germinal-center B cells are green, lineage-traced naïve B cells are red, and collagen-rich tissue structure is blue.

Immune cells encounter tissues in dramatically different physiological states. What information do they extract from those environments, and how does it change what they become?

Immune responses are shaped by where they occur.

Immune-cell fate is not determined by antigen recognition alone. We study how tissue context is sensed and translated into changes in lymphocyte identity, behavior, and long-term function.

Conceptual human figure connected to lymph node, tumor, intestine, and adipose tissue niches, each containing a lymphocyte in a distinct state

Local physiology changes the information available to lymphocytes.

We study how lymphocytes experience and adapt to the distinct physiological conditions of lymph nodes, spleen, bone marrow, intestine, adipose tissue, and tumors—and how those environments alter cell identity and function.

01

Tissue adaptation

How tissue environments shape immune-cell identity

We investigate how lymphocytes acquire and interpret information from the tissues they enter, and how local physiological states alter their development and function.

02

Cell fate

How lymphocytes adopt distinct developmental and effector states

We study how environmental signals regulate lymphocyte development, differentiation, and effector function—from thymic development and germinal-center responses to memory formation, plasma-cell differentiation, and cytokine production in tumors.

03

Disease context

How lymphocyte states influence health and disease

We examine adaptive immune responses in cancer, metabolic inflammation, infection, and vaccination to understand when tissue adaptation becomes protective or pathogenic.

Mapping lymphocyte states

01

B-cell states

Single-cell map of B-cell states
  • Core naïve B cells
  • Transitional B cells
  • ISG+ naïve B cells
  • Early memory B cells
  • Core memory B cells
  • Activated memory B cells
  • CD95+ memory B cells
  • CD27− effector B cells
  • CD27+ effector B cells
  • Type 2–polarized memory B cells
  • Plasma cells
02

B-cell developmental progression

Single-cell map colored from early to late B-cell developmental progression
EarlyLate

We investigate how tissue-derived information influences B-cell differentiation into distinct memory, effector, and plasma-cell states.

03

T-cell states in the intestine

Single-cell map of T-cell states

We map T-cell states in the intestine to study how gut physiology and colorectal tumors shape T-cell identity and effector function.

  • γδ T cells
  • Naïve γδ T cells
  • MAIT cells
  • Cycling T/NK cells
  • T follicular helper cells
  • Naïve T follicular helper cells
  • Naïve/central-memory CD4 T cells
  • Naïve/central-memory CD8 T cells
  • Regulatory T cells
  • IL-10+ regulatory T cells
  • Tissue-resident memory CD4 T cells
  • Tissue-resident memory CD8 T cells
  • Th17-like tissue-resident memory T cells
  • Tissue-resident/effector-memory CD8 T cells

Testing candidate protein–ligand interactions

Structural modeling provides a focused way to nominate molecular interactions for biochemical and functional testing.

Molecular docking model showing a candidate ligand within a protein binding pocket
Computational model of a candidate molecular interaction.
Genetic mouse modelsAdvanced microscopyHigh-dimensional cytometrySingle-cell genomics

Selected publications

Our team

We pair original, rigorous science with individualized mentorship, transparent expectations, and active sponsorship so researchers from different backgrounds and career stages can do their best work.

Thomas Hägglöf

Thomas Hägglöf, PhD

Assistant Professor, Department of Microbiology & Immunology

Thomas Hägglöf is an immunologist studying how lymphocytes acquire, interpret, and respond to information from tissue environments. His work spans lymphocyte activation, selection, differentiation, and intercellular communication, with a focus on mechanisms that shape protective and pathogenic immunity.

01

Linh Mai, PhD

Postdoctoral Fellow

  • PhD, Virology & Immunology — Institut national de la recherche scientifique (INRS)
  • MSc, Virology & Immunology — Institut national de la recherche scientifique (INRS)
  • Biotechnology Engineering — Thai Nguyen University of Agriculture and Forestry
02

Smrithi Jayashree Satheeshkumar

PhD Student

  • MSc, Biochemistry — University of Kerala
  • BSc, Biochemistry — University of Kerala
03

Tianyun Jiang, MPH

Research Technician

  • MPH, Epidemiology; Applied Biostatistics Certificate — Columbia University
  • BSc (Hons), Biochemistry & Pharmacology — University of Toronto
04

Andrea Amegashie

BEYOND ALBERT Scholar & Lab Volunteer

05

Sooik Son

Rotation Student

  • MPH, Environmental Health Sciences — Columbia University
  • BS, Biochemistry & Molecular Biology and Environmental Studies — Dickinson College

Support for the laboratory

The laboratory's research is generously supported and strengthened by an interdisciplinary cancer research community.

From the laboratory

Presentations, recognition, and developments from the lab.

October 8, 2026Presentation

Dr. Linh Mai presents at the MECCC Annual Scientific Retreat

Linh presented the laboratory's work on lymphocyte responses in colorectal cancer at the MECCC Annual Scientific Retreat: From Discovery to Impact.

Dr. Linh Mai presenting in Robbins Auditorium at the 2026 MECCC Annual Scientific Retreat
August 24, 2026People

Sooik Son begins a laboratory rotation

Sooik joined the lab as a rotation student.

August 20, 2026Presentation

Andrea presents at the BEYOND ALBERT Symposium

Andrea Amegashie presented at the MECCC BEYOND ALBERT Symposium, sharing her work through both poster and oral presentations.

Andrea Amegashie and Thomas Hägglöf beside Andrea's poster at the 2026 BEYOND ALBERT Symposium
July 1, 2026People

Smrithi Jayashree Satheeshkumar joins the laboratory

Smrithi Jayashree Satheeshkumar officially joined the lab as a PhD student.

June 29, 2026People

Andrea Amegashie joins through BEYOND ALBERT

Andrea joined the lab as a BEYOND ALBERT Scholar and Lab Volunteer.

June 27, 2025People

Dr. Linh Mai joins the laboratory

Linh joined the lab as a postdoctoral fellow.

January 17, 2025Milestone

The Hägglöf Lab opens

The laboratory officially opened in January 2025.

Scientific independence is the goal.

We train scientists to identify important problems, design experiments that distinguish among explanations, interpret ambiguous data honestly, and communicate their reasoning clearly.

Technical skill is part of that training, but methods are tools. No instrument can substitute for understanding the problem or asking a decisive question.

01

Learn by doing

Trainees take ownership of real scientific questions early, with the degree of structure matched to their experience. We work closely at the bench and in experimental planning, then expand responsibility as judgment and confidence develop.

02

Reason before technology

We begin with the biological question, the competing explanations, and the result that would change our interpretation. We then choose the most informative experiment. New technologies are valuable when they resolve a real limitation—not simply because they are new.

03

Equity requires individualized support

People enter science with different access to research experience, professional networks, and informal guidance. Our standards are shared; the support used to reach them is individualized. Expectations are made explicit, and training and opportunities are adapted so each person can develop toward independence.

04

Feedback, credit, and sponsorship matter

Mentorship includes candid feedback, fair attribution, and active advocacy. We discuss responsibilities and authorship early, create opportunities to present and write, and help each trainee build the skills, relationships, and visibility needed for the next step.

Mentoring is a practice, not a statement.

Needs change as projects and careers develop. Mentoring plans are revisited rather than assumed, and feedback should move in both directions.

  • Regular one-on-one meetings about the science, progress, and longer-term goals
  • Project ownership appropriate to career stage, with explicit milestones and room to redirect
  • Direct feedback on experimental design, data interpretation, writing, and presentation
  • Transparent expectations for authorship, credit, collaboration, and responsibilities
  • Active support for fellowships, conferences, collaborations, and career transitions
  • A laboratory in which questions can be asked and mistakes examined without humiliation

Science is collaborative.

Lab members are expected to share knowledge, scrutinize ideas without attacking people, acknowledge one another's contributions, and help colleagues succeed. Disrespect, exclusion, and retaliation are incompatible with the way we work.

Based in the Bronx, the laboratory participates in BEYOND ALBERT, which provides local high-school students with sustained research experience at Montefiore Einstein. We aim to make serious scientific training accessible to students from the surrounding community and help them see a path into biomedical research. Across career stages, we evaluate mentoring by whether trainees gain independence, produce rigorous work, and move toward careers they choose.

We are building a collaborative team around difficult biological questions.

We welcome inquiries from prospective postdoctoral fellows, graduate students, research staff, and collaborators interested in lymphocyte biology, tissue physiology, cancer, and inflammation.

Email the lab

Laboratory and office

Location

Forchheimer Building, Room 416
Albert Einstein College of Medicine
1300 Morris Park Avenue
Bronx, NY 10461
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Email

thomas.hagglof@einsteinmed.edu